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hal-01544804v1  Journal articles
E. BaptesteC. BicepP. Lopez. Evolution of genetic diversity using networks: the human gut microbiome as a case study
Clinical Microbiology and Infection, Elsevier for the European Society of Clinical Microbiology and Infectious Diseases, 2012, 18 (4, SI), pp.40-43. ⟨10.1111/j.1469-0691.2012.03856.x⟩
hal-01544803v1  Journal articles
Eric BaptestePhilippe LopezFrederic BouchardFernando BaqueroJames O. Mcinerney et al.  Evolutionary analyses of non-genealogical bonds produced by introgressive descent
Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2012, 109 (45), pp.18266-18272. ⟨10.1073/pnas.1206541109⟩
hal-01544798v1  Journal articles
David Alvarez-PoncePhilippe LopezEric BaptesteJames O. Mcinerney. Gene similarity networks provide tools for understanding eukaryote origins and evolution
Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2013, 110 (17), pp.E1594-E1603. ⟨10.1073/pnas.1211371110⟩
hal-01544903v1  Journal articles
Jean-Pierre Coutanceau. Ladybirds from the Mercantour National Park (Coleoptera: Coccinellidae)
Zoosystema, Museum Nationale d'Histoire Naturelle Paris, 2015, 37 (1), pp.193-205. ⟨10.5252/z2015n1a9⟩
hal-01544796v1  Journal articles
Eric BaptesteJohn Dupre. Towards a processual microbial ontology
Biology and Philosophy, Springer Verlag, 2013, 28 (2, SI), pp.379-404. ⟨10.1007/s10539-012-9350-2⟩
hal-01544801v1  Book sections
Eric BaptesteFrederic BouchardRichard M. Burian. Philosophy and Evolution: Minding the Gap Between Evolutionary Patterns and Tree-Like Patterns
Anisimova, M. EVOLUTIONARY GENOMICS: STATISTICAL AND COMPUTATIONAL METHODS, VOL 2, 856 (2), HUMANA PRESS INC, pp.81-110, 2012, Methods in Molecular Biology, 978-1-61779-584-8. ⟨10.1007/978-1-61779-585-5_4⟩
hal-01544793v1  Journal articles
Raphael MeheustEhud ZelzionDebashish BhattacharyaPhilippe LopezEric Bapteste. Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis
Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2016, 113 (13), pp.3579-3584. ⟨10.1073/pnas.1517551113⟩
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hal-01224215v1  Journal articles
Eva BoonSébastien HalaryEric BaptesteMohamed Hijri. Studying Genome Heterogeneity within the Arbuscular Mycorrhizal Fungal Cytoplasm
Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2015, 7 (2), pp.505-521. ⟨10.1093/gbe/evv002⟩
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hal-01798030v1  Journal articles
Eduardo CorelRaphaël MéheustAndrew K WatsonJames O McinerneyPhilippe Lopez et al.  Bipartite Network Analysis of Gene Sharings in the Microbial World
Molecular Biology and Evolution, Oxford University Press (OUP), 2018, 35 (4), pp.899-913. ⟨10.1093/molbev/msy001⟩
hal-01544794v1  Journal articles
Leanne S. HaggertyPierre-Alain JachietWilliam P. HanageDavid A. FitzpatrickPhilippe Lopez et al.  A Pluralistic Account of Homology: Adapting the Models to the Data
Molecular Biology and Evolution, Oxford University Press (OUP), 2014, 31 (3), pp.501-516. ⟨10.1093/molbev/mst228⟩