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Formation, distribution and behaviour of Complex Organic Molecules (COM's) in space is an important subject of research to the better understanding of the initial condition for the appearance of life on Earth. Furthermore, the study of high energy chemical processes in the interstellar medium (cosmic radiation's effect) and in solar system (solar wind's effect), is been of high interest. The aim of this work is to study astrophysical molecules trapped in interstellar ice systems under the effect of high energy radiation. These ices are characterised by being large systems, with large number of atoms. QM/MM hybrid method has become a very popular tool for molecular systems' simulations with a large number of atoms, appearing as a good compromise between accuracy and computational costs. We report the implementation of QM/MM hybrid method in the deMonNano software, using the Density Functional based Tight Binding (DFTB), an approximated DFT scheme, combined with Molecular Mechanic (MM) approach, namely Force Fields (FF) of class 1, such as OPLS-AA and AMBER-families of FFs. A complete implementation was performed using the QM/MM additive coupling scheme. In addition, the investigation of high energy chemical processes requires the explicit simulation of the electronic dynamics beyond the Born Oppenheimer approximation. As first step towards such dynamics, we will report the implementation of Real Time TD-DFTB in deMonNano, consisting in solving the Time-Dependent Schrödinger equation within the DFTB, where the electronic density matrix is propagated along time. We report a detailed introduction to new DFTB/MM and RT-TD-DFTB implementations as well as the complete study on glycine prebiotic molecule trapped in an interstellar ice. PAH interstellar systems will be also a matter of study.
Fullerene C 60 is one of the most iconic forms of carbon found in the interstellar medium (ISM). The interstellar chemistry of carbon-rich components, including fullerenes, is driven by a variety of energetic processes including UV and X-ray irradiation, cosmic-ray (CR) bombardment, electron impact, and shock waves. These violent events strongly alter the particle phase and lead to the release of new molecular species in the gas phase. Only a few experimental studies on the shock processing of cosmic analogs have been conducted so far. We explored in the laboratory the destruction of buckminsterfullerene C 60 using a pressure-driven shock tube coupled with optical diagnostics. Our efforts were first devoted to probing in situ the shock-induced processing of C 60 at high temperatures (≤ 4500 K) by optical emission spectroscopy. The analysis of the spectra points to the massive production of C 2 units. A broad underlying continuum was observed as well and was attributed to the collective visible emission of carbon clusters, generated similarly in large amounts. This proposed assignment was performed with the help of calculated emission spectra of various carbon clusters. The competition between dissociation and radiative relaxation, determined by statistical analysis, alludes to a predominance of clusters with less than 40 carbon atoms. Our laboratory experiments, supported by molecular dynamics simulations performed in the canonical ensemble, suggest that C 60 is very stable, and that high-energy input is required to process it under interstellar low-density conditions and to produce C 2 units and an abundance of intermediate-sized carbon clusters. These results provide some insights into the life cycle of carbon in space. Our findings hint that only J-type shocks with velocities above ~100 km s −1 or C-type shocks with velocities above 9 km s −1 can lead to the destruction of fullerenes. Observational tracers of this process remain elusive, however. Our work confirms the potential of shock tubes for laboratory astrophysics.
Mid-infrared emission features probe the properties of ionized gas, and hot or warm molecular gas. The Orion Bar is a frequently studied photodissociation region (PDR) containing large amounts of gas under these conditions, and was observed with the MIRI IFU aboard JWST as part of the "PDRs4All" program. The resulting IR spectroscopic images of high angular resolution (0.2") reveal a rich observational inventory of mid-IR emission lines, and spatially resolve the substructure of the PDR, with a mosaic cutting perpendicularly across the ionization front and three dissociation fronts. We extracted five spectra that represent the ionized, atomic, and molecular gas layers, and measured the most prominent gas emission lines. An initial analysis summarizes the physical conditions of the gas and the potential of these data. We identified around 100 lines, report an additional 18 lines that remain unidentified, and measured the line intensities and central wavelengths. The H I recombination lines originating from the ionized gas layer bordering the PDR, have intensity ratios that are well matched by emissivity coefficients from H recombination theory, but deviate up to 10% due contamination by He I lines. We report the observed emission lines of various ionization stages of Ne, P, S, Cl, Ar, Fe, and Ni, and show how certain line ratios vary between the five regions. We observe the pure-rotational H$_2$ lines in the vibrational ground state from 0-0 S(1) to 0-0 S(8), and in the first vibrationally excited state from 1-1 S(5) to 1-1 S(9). We derive H$_2$ excitation diagrams, and approximate the excitation with one thermal (~700 K) component representative of an average gas temperature, and one non-thermal component (~2700 K) probing the effect of UV pumping. We compare these results to an existing model for the Orion Bar PDR and highlight the differences with the observations.
Most low-mass stars form in stellar clusters that also contain massive stars, which are sources of far-ultraviolet (FUV) radiation. Theoretical models predict that this FUV radiation produces photodissociation regions (PDRs) on the surfaces of protoplanetary disks around low-mass stars, which affects planet formation within the disks. We report James Webb Space Telescope and Atacama Large Millimeter Array observations of a FUV-irradiated protoplanetary disk in the Orion Nebula. Emission lines are detected from the PDR; modeling their kinematics and excitation allowed us to constrain the physical conditions within the gas. We quantified the mass-loss rate induced by the FUV irradiation and found that it is sufficient to remove gas from the disk in less than a million years. This is rapid enough to affect giant planet formation in the disk.
Sujets
Benzene
Astrochimie
Infrared spectra
Atrazine
Polycyclic Aromatic Hydrocarbons
Molecular processes
Argon
Configuration interaction
Dissociation
Carbonaceous grains
CID
Atomic scattering from surfaces
Database
QSAR
Anharmonic Infrared Spectroscopy
Molecular clusters
Agrégats moléculaires
Dynamique moléculaire
Carbon cluster
Density Functional Theory
Argile
Quantum chemistry
2
Dusty plasma
Catalyse
Clusters
Benzene dimers
DFTB-CI
Dynamique Moléculaire Car-Parrinello
Modelling
Density functional based tight binding DFTB
Agrégats
Chemical shift
Brown dwarfs
Amorphous
Charge resonance
DFTB
Dissipation
Dftb
Methods laboratory molecular
DUST
Approche mixte quantique/classique
Polycyclic aromatic hydrocarbon PAH
BOMD
Disconnectivity tree
22 pole cryogenic ion trap
Collision Induced Dissociation
Line profiles
CONFIGURATION-INTERACTION
CAH
Excited states
HAP
Chimie quantique
1
Nanoparticles
Molecular data
ISM molecules
Ammonium/ammonia water clusters
Molecular dynamics
PAH
Agrégats aqueux d'ammonium/ammoniac
Cryogenic ion trap
White dwarfs
Charged system and open shell
Agrégats d'eau
Density functional tight binding
Density functional theory
Agrégats aqueux
Atomic data
Alanine dipeptide
Abundances -ISM
Dynamique électronique
Infrared spectroscopy
Astrochemistry
Probability flows
Clay mineral
Champ de forces
Disconnectivity Tree
Au147
Agrégats protonés uracile-eau
Barium
Agrégats protonés
Optical spectra
Dynamics
Modélisation
Auxiliary density functional theory
Charge transfer state
Biodegradation
CONSTANTS
SCC-DFTB
Corannulene
Car-Parrinello molecular dynamics
Clustering
Catalysis
Carbon clusters
DFT
Water clusters
ADFT
Threshold algorithm